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	<title>JasonJackson.com &#187; Science</title>
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	<link>http://jasonjackson.com/weblog</link>
	<description>A site about programming and life.</description>
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		<title>Book Review: The Language of Life</title>
		<link>http://jasonjackson.com/weblog/2010/06/01/book-review-the-language-of-life/</link>
		<comments>http://jasonjackson.com/weblog/2010/06/01/book-review-the-language-of-life/#comments</comments>
		<pubDate>Tue, 01 Jun 2010 20:58:28 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=1002</guid>
		<description><![CDATA[Last week I finished reading The Language of Life: DNA and the Revolution in Personalized Medicine by Francis S. Collins.  It has taken me a few days to digest the ideas in the book, such is the scope and depth of the materials presented. Collins is an expert in genetics, holding a PhD in chemistry [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://jasonjackson.com/weblog/wp-content/uploads/2010/06/dna.jpg"><img class="alignleft size-full wp-image-1003" title="The Language of Life" src="http://jasonjackson.com/weblog/wp-content/uploads/2010/06/dna.jpg" alt="" width="74" height="110" /></a>Last week I finished reading <a href="http://www.amazon.com/gp/product/0061733172?ie=UTF8&amp;tag=jasonsnewspun-20&amp;linkCode=as2&amp;camp=1789&amp;creative=390957&amp;creativeASIN=0061733172" target="_blank">The Language of Life: DNA and the Revolution in Personalized Medicine</a> by <a href="Francis S. Collins" target="_blank">Francis S. Collins</a>.  It has taken me a few days to digest the ideas in the book, such is the scope and depth of the materials presented.</p>
<p>Collins is an expert in genetics, holding a PhD in chemistry and an MD, and ran the <a href="http://en.wikipedia.org/wiki/Human_Genome_Project" target="_blank">Human Genome Project</a>.  With this background, and knowledge from a number of professional relationships he has built, a vast tale of personal medicine based on genetics is told.   He manages to tie together large bodies of cited research with human stories.  The author brings real stories of real people impacted by real science: cutting-edge  genetic testing and genetic treatments.  These are stories of cancer, Huntington&#8217;s disease, Alzheimer&#8217;s disease, and heart attacks.  They are stories of sorrow, of hope, and of the controversy and ethics of stem cells, cloning, and genetic testing of fetuses.</p>
<p>I was caught off guard with the advances being made in the various medical fields related to genetics.  This isn&#8217;t pie-in-the-sky stuff.  Collins documents a well-know (in medical circles) case of AIDS being cured with a genetically-modified stem cell implant.  He discusses how patients&#8217; lives have been saved with genetic screening, and how patients have avoided painful and unnecessary procedures because of the same screening.  He also discusses a number of cures waiting in the wings, often delayed by an archaic FDA.</p>
<p>Most convincing to me was his line of predictions.  Collins illustrated 10 predictions he made in 2000 about the state of genetic medicine in 2010.  At the time he got laughs, yet all 10 predictions have come true.  He lays out further predictions for the future.  We are looking at a time when major diseases could be cured due to our increased understanding of DNA, and new techniques being developed almost weekly for the modification of our genetic code.</p>
<p>Beyond the stories and the medicine, this book provides a solid layman&#8217;s education in DNA and microbiology.  I would recommend it to anyone with a disease (especially cancer), to anyone concerned about their health, or anyone curious about genetics and the future of medicine.</p>
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		<title>Where Capitalism and Climate Science Meet</title>
		<link>http://jasonjackson.com/weblog/2010/04/19/where-capitalism-and-climate-science-meet/</link>
		<comments>http://jasonjackson.com/weblog/2010/04/19/where-capitalism-and-climate-science-meet/#comments</comments>
		<pubDate>Mon, 19 Apr 2010 20:38:37 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=958</guid>
		<description><![CDATA[Wired has a great article about how businesses are actually listening to the scientists and changing their business practices based on the reality of global warming.  Some businesses, like global shipper Beluga, are using new Arctic Sea routes that weren&#8217;t open even a couple of years ago.  Other businesses like insurance companies are betting that [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://jasonjackson.com/weblog/wp-content/uploads/2010/04/global-warming-polar-bear.jpg"><img class="alignleft size-thumbnail wp-image-961" title="Polar Bear" src="http://jasonjackson.com/weblog/wp-content/uploads/2010/04/global-warming-polar-bear-150x150.jpg" alt="" width="150" height="150" /></a>Wired <a href="http://www.wired.com/wiredscience/2010/04/climate-desk-corporations-risk/?utm_source=feedburner&amp;utm_medium=feed&amp;utm_campaign=Feed%3A+wired%2Findex+%28Wired%3A+Index+3+%28Top+Stories+2%29%29&amp;utm_content=Google+Feedfetcher" target="_blank">has a great article</a> about how businesses are actually listening to the scientists and changing their business practices based on the reality of global warming.  Some businesses, like global shipper Beluga, are using new Arctic Sea routes that weren&#8217;t open even a couple of years ago.  Other businesses like insurance companies are betting that global warming is real.  Corporations cannot afford to listen to science-denier politics.  A corporation has to, you know, actually exist in the real world of facts and make money in that world.  Here is a short quote from an unusually good article from Wired.  I would encourage you to read the whole thing.</p>
<blockquote><p>Companies, of course, exist to make money. That’s often what makes them  seem so rapacious. But their primal greed also plants them inevitably in  the “reality-based community.” If a firm’s bottom line is going to be  affected by a changing climate — say, when its supply chains dry up  because of drought, or its real estate gets swamped by sea-level rise —  then it doesn’t particularly matter whether or not the executives <em>want</em> to believe in climate change. Railing at scientists for massaging  tree-ring statistics won’t stop the globe from warming if the globe is  actually, you know, warming. The same applies in reverse, as the folks  at Beluga Shipping adroitly realized: If there are serious bucks to be  made from the changing climate, then the free market is almost certainly  going to jump at it.</p></blockquote>
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		<title>Pigasus Awards 2010</title>
		<link>http://jasonjackson.com/weblog/2010/04/06/pigasus-awards-2010/</link>
		<comments>http://jasonjackson.com/weblog/2010/04/06/pigasus-awards-2010/#comments</comments>
		<pubDate>Tue, 06 Apr 2010 19:33:17 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=945</guid>
		<description><![CDATA[]]></description>
			<content:encoded><![CDATA[<p><object width="500" height="306"><param name="movie" value="http://www.youtube.com/v/iujAqCpBf_k&#038;fs=1"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/iujAqCpBf_k&#038;fs=1" type="application/x-shockwave-flash" width="500" height="306" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
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		<title>The Evolution of Dogs</title>
		<link>http://jasonjackson.com/weblog/2010/03/30/the-evolution-of-dogs/</link>
		<comments>http://jasonjackson.com/weblog/2010/03/30/the-evolution-of-dogs/#comments</comments>
		<pubDate>Tue, 30 Mar 2010 14:49:09 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=919</guid>
		<description><![CDATA[I just finished a fascinating read about the evolution of dogs over at the ScienceBlog Observations of a Nerd.  Having read quite a bit about evolution including Darwin&#8217;s founding work, I found the discussion of dogs very interesting.  Darwin spent significant time on the subject of domesticated animals in On The Origin of Species.  He [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://jasonjackson.com/weblog/wp-content/uploads/2010/03/dog-bed.jpg"><img class="alignright size-medium wp-image-922" title="dog-bed" src="http://jasonjackson.com/weblog/wp-content/uploads/2010/03/dog-bed-300x257.jpg" alt="" width="300" height="257" /></a>I just finished a fascinating read about the evolution of dogs over at the ScienceBlog <a href="http://scienceblogs.com/observations/2010/01/evolution-the-curious-case-of-dogs.php" target="_blank">Observations of a Nerd</a>.  Having read quite a bit about evolution including Darwin&#8217;s founding work, I found the discussion of dogs very interesting.  Darwin spent significant time on the subject of domesticated animals in <a href="http://en.wikipedia.org/wiki/On_the_Origin_of_Species" target="_blank">On The Origin of Species</a>.  He was wrong about the fact that dogs originated from multiple species, but fortunately he was right about everything else.</p>
<p>Observations of a Nerd tells a fascinating story about the evolution of wild dogs in Moscow.  Apparently they have evolved into four general breeds of dogs with specific traits.  This highlights how extreme conditions can accelerate the normally slow pace we associate with evolution.</p>
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		<title>Apollo 13 Failure Scenario</title>
		<link>http://jasonjackson.com/weblog/2010/03/26/apollo-13-failure-scenario/</link>
		<comments>http://jasonjackson.com/weblog/2010/03/26/apollo-13-failure-scenario/#comments</comments>
		<pubDate>Fri, 26 Mar 2010 19:39:26 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=909</guid>
		<description><![CDATA[Here is a cool simulation of what would have occurred to Apollo 13 had they not corrected course.]]></description>
			<content:encoded><![CDATA[<p>Here is a cool simulation of what would have occurred to Apollo 13 had they not corrected course.</p>
<p><object width="500" height="306"><param name="movie" value="http://www.youtube.com/v/KUAo_T__J2A&#038;fs=1"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/KUAo_T__J2A&#038;fs=1" type="application/x-shockwave-flash" width="500" height="306" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
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		<title>DNA, RNA, Nanotechnology and Cancer</title>
		<link>http://jasonjackson.com/weblog/2010/03/24/dna-rna-nanotechnology-and-cancer/</link>
		<comments>http://jasonjackson.com/weblog/2010/03/24/dna-rna-nanotechnology-and-cancer/#comments</comments>
		<pubDate>Wed, 24 Mar 2010 15:56:30 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=899</guid>
		<description><![CDATA[The true nature of DNA was discovered in 1953 by James D. Watson and Francis Crick, two giants of the scientific world.  Crick, who also did work in physics and and neuroscience, established the central model of how DNA &#8220;controls&#8221; the cell, or what has become known as the Central Dogma of molecular biology.  The [...]]]></description>
			<content:encoded><![CDATA[<p>The true nature of <a href="http://en.wikipedia.org/wiki/DNA" target="_blank">DNA</a> was discovered in 1953 by <a href="http://en.wikipedia.org/wiki/James_D._Watson" target="_blank">James D. Watson</a> and <a href="http://en.wikipedia.org/wiki/Francis_Crick" target="_blank">Francis Crick</a>, two giants of the scientific world.  Crick, who also did work in physics and and neuroscience, established the central model of how DNA &#8220;controls&#8221; the cell, or what has become known as the <a href="http://en.wikipedia.org/wiki/Central_dogma_of_molecular_biology" target="_blank">Central Dogma of molecular biology</a>.  The general idea is that DNA makes RNA, and RNA makes protein, and protein interacts with any number of processes in the cell.  The model has been refined over the years, but the core tenets still stand.</p>
<p>An important part of the DNA &lt;-&gt; RNA -&gt; Protein model is RNAi, or RNA interference.  RNA provides a couple of mechanisms that allow interference of what parts of the DNA (genes) are being expressed (turned-on) in a cell, and to what extent those that are turned on influence cellular processes.  RNAi is important in the development and day-to-day (or minute-to-minute) running of a cell.  It is also an important mechanism for fighting off viruses and other invaders of the cell.</p>
<p>Because RNAi can be used to turn-down or turn-off functions in the cell, it has long been seen as a possible weapon against disease.  For example, cancer cells could be targeted with RNAi from outside the cell and reproduction or mutation could be halted.  In this way cancer cells could be killed.  This same technique could be used to guard against viruses and other genetic pirates of the molecular biology world.</p>
<p>One problem with this approach has been the inability to correctly target only those cells that one wishes to affect.</p>
<p><a href="http://en.wikipedia.org/wiki/Nanotechnology" target="_blank">Nanotechnology</a> has a history filled with more speculation and hypothesis than experimental science and real use.  However, in recent years nanotech and medicine have seen a couple of breakthroughs that might result in new therapies for disease.  A breakthrough last year showed how gold nanoparticles can been used in conjunction with radiation to <a href="http://en.wikipedia.org/wiki/Nanotechnology" target="_blank">treat cancer</a>.  And now researches at  CalTech have demonstrated nanobots that accurately <a href="http://www.popsci.com/science/article/2010-03/nanotech-robots-deploy-cancer-fighting-rna" target="_blank">deliver RNAi to melanoma cells</a> (cancer).  This type of chemical deliver has huge promise.</p>
<p>The fight against cancer has always been waged with blunt instruments.  Chemotherapy attacks the cancer, but it also attacks healthy systems in the patient.  The same is true of radiation treatments.  Surgery is invasive and often ineffective.  But the delivery of specific chemical compounds to very specific locations within the body (individual cells!) could see the battle against cancer and other diseases gaining a very precision weapon.</p>
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		<title>Sam Harris: Science can answer moral questions</title>
		<link>http://jasonjackson.com/weblog/2010/03/22/sam-harris-science-can-answer-moral-questions/</link>
		<comments>http://jasonjackson.com/weblog/2010/03/22/sam-harris-science-can-answer-moral-questions/#comments</comments>
		<pubDate>Mon, 22 Mar 2010 18:34:50 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=896</guid>
		<description><![CDATA[]]></description>
			<content:encoded><![CDATA[<p><!--copy and paste--><object width="446" height="326"><param name="movie" value="http://video.ted.com/assets/player/swf/EmbedPlayer.swf"></param><param name="allowFullScreen" value="true" /><param name="wmode" value="transparent"></param><param name="bgColor" value="#ffffff"></param><param name="flashvars" value="vu=http://video.ted.com/talks/dynamic/SamHarris_2010-medium.flv&#038;su=http://images.ted.com/images/ted/tedindex/embed-posters/SamHarris-2010.embed_thumbnail.jpg&#038;vw=432&#038;vh=240&#038;ap=0&#038;ti=801&#038;introDuration=16500&#038;adDuration=4000&#038;postAdDuration=2000&#038;adKeys=talk=sam_harris_science_can_show_what_s_right;year=2010;theme=unconventional_explanations;theme=a_taste_of_ted2010;theme=bold_predictions_stern_warnings;theme=is_there_a_god;theme=the_rise_of_collaboration;theme=new_on_ted_com;event=TED2010;&#038;preAdTag=tconf.ted/embed;tile=1;sz=512x288;" /><embed src="http://video.ted.com/assets/player/swf/EmbedPlayer.swf" pluginspace="http://www.macromedia.com/go/getflashplayer" type="application/x-shockwave-flash" wmode="transparent" bgColor="#ffffff" width="446" height="326" allowFullScreen="true" flashvars="vu=http://video.ted.com/talks/dynamic/SamHarris_2010-medium.flv&#038;su=http://images.ted.com/images/ted/tedindex/embed-posters/SamHarris-2010.embed_thumbnail.jpg&#038;vw=432&#038;vh=240&#038;ap=0&#038;ti=801&#038;introDuration=16500&#038;adDuration=4000&#038;postAdDuration=2000&#038;adKeys=talk=sam_harris_science_can_show_what_s_right;year=2010;theme=unconventional_explanations;theme=a_taste_of_ted2010;theme=bold_predictions_stern_warnings;theme=is_there_a_god;theme=the_rise_of_collaboration;theme=new_on_ted_com;event=TED2010;"></embed></object></p>
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		<title>What If You&#8217;re Wrong?</title>
		<link>http://jasonjackson.com/weblog/2010/03/02/what-if-youre-wrong/</link>
		<comments>http://jasonjackson.com/weblog/2010/03/02/what-if-youre-wrong/#comments</comments>
		<pubDate>Tue, 02 Mar 2010 15:02:41 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Life]]></category>
		<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=871</guid>
		<description><![CDATA[]]></description>
			<content:encoded><![CDATA[<p><object width="500" height="306"><param name="movie" value="http://www.youtube.com/v/fPJQw-x-xho&#038;fs=1"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/fPJQw-x-xho&#038;fs=1" type="application/x-shockwave-flash" width="500" height="306" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
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		<title>Staw Man</title>
		<link>http://jasonjackson.com/weblog/2010/03/01/staw-man/</link>
		<comments>http://jasonjackson.com/weblog/2010/03/01/staw-man/#comments</comments>
		<pubDate>Mon, 01 Mar 2010 19:09:43 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=865</guid>
		<description><![CDATA[Science isn&#8217;t about the person, its about the theory and the evidence.  Of course the people matter as they are the ones doing all the work, but at the end of the day our understanding of the universe and the natural world does not rely upon one person being right or wrong, but upon the [...]]]></description>
			<content:encoded><![CDATA[<p>Science isn&#8217;t about the person, its about the theory and the evidence.  Of course the people matter as they are the ones doing all the work, but at the end of the day our understanding of the universe and the natural world does not rely upon one person being right or wrong, but upon the evidence we find to support specific conclusions.  The theory itself might be changed, by the original author or by many in the scientific community, to more closely agree with the data.  This is a basic tenant of science.  We judge the resulting product based on the evidence, not whether it conveniently falls into a religious or political ideology.</p>
<p>Image if Einstein decided to retract general relativity in the late 1920s, with no reason or evidence justifying this action.  Imagine he simply decided that he no longer supported the idea.  Surely that would have caused a great stir in the scientific world and particularly in the world of theoretical physics.  However, the scientific community, in the end, would not have abandoned general relativity without proof it was wrong.  They would have stood by the theory, since in the 1920s there was already a lot of proof that it was very right.  We don&#8217;t need Einstein to agree that the theory is sound; we need evidence to agree that the idea is sound.</p>
<p>Similarly with evolution, Darwin doesn&#8217;t really matter  other than the fact he first proposed it.  What matters is not what  aspects of his original theory are right or wrong, though the vast majority of Darwin&#8217;s original theory has survived the test of time and more than one revolution in biology.  What Darwin said or  did doesn&#8217;t change reality.  The theory, backed with evidence, changes our perceptions.  And that  evidence is overwhelming in the cases of General Relativity and Evolution.  An attack on Darwin, or Einstein, is just an  attack on a person, not on all the evidence supporting their theories.</p>
<p>A belief in evolution is not a faith.  Its based on the fact that evolution has been proven true by multiple, separate lines of evidence.  Evolution, for all intents and purposes, is a scientific fact.  It doesn&#8217;t matter what attacks might be made on the great man.  Those attacks, or anything Darwin said or did, does not change the physical reality that all organisms have evolved to their current states via natural selection.</p>
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		<title>Book Review: How to Teach Physics to Your Dog</title>
		<link>http://jasonjackson.com/weblog/2010/02/26/book-review-how-to-teach-physics-to-your-dog/</link>
		<comments>http://jasonjackson.com/weblog/2010/02/26/book-review-how-to-teach-physics-to-your-dog/#comments</comments>
		<pubDate>Sat, 27 Feb 2010 03:52:33 +0000</pubDate>
		<dc:creator>jason</dc:creator>
				<category><![CDATA[Books]]></category>
		<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://jasonjackson.com/weblog/?p=859</guid>
		<description><![CDATA[I finished How to Teach Physics To Your Dog by Chad Orzel about a month ago, and have found myself thinking about it off and on during that time.  For the difficult subject of Quantum Physics, Orzel does a very good job conveying unintuitive concepts so that a non-physicist might understand them.  The book takes [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://jasonjackson.com/weblog/wp-content/uploads/2010/02/sm_cover_draft_atom.jpg"><img class="alignleft size-full wp-image-863" title="How to Teach Physics to Your Dog" src="http://jasonjackson.com/weblog/wp-content/uploads/2010/02/sm_cover_draft_atom.jpg" alt="" width="150" height="242" /></a>I finished <a href="http://www.amazon.com/gp/product/1416572287?ie=UTF8&amp;tag=jasonjaccom-20&amp;linkCode=as2&amp;camp=1789&amp;creative=390957&amp;creativeASIN=1416572287" target="_blank">How to Teach Physics To Your Dog</a> by <a href="http://scienceblogs.com/principles/" target="_blank">Chad Orzel</a> about a month ago, and have found myself thinking about it off and on during that time.  For the difficult subject of Quantum Physics, Orzel does a very good job conveying unintuitive concepts so that a non-physicist might understand them.  The book takes the format of Orzel teaching physics to his dog through many conversations that are often humorous and always lead to an in-depth discussion regarding Quantum Physics.  Having read a few other books on Physics and at least one other book on Quantum Physics, I was familiar with several of the concepts.  However, Orzel did a very good job diving into a level of detail that I had no previously seen, despite the accessibility of his writing style.</p>
<p>Quantum Physics flies in the face of common sense.  Our brains evolved with macro cause and effect, with objects that are solid and act in a fashion that we expect.  Particles at the quantum scale do not act solid, do not act in a fashion that our brain would expect, yet this science and been experimentally proven to a level that is only rivaled by the evidence for evolution or relativity.</p>
<p>One of my favorite sections of the book addresses quackery and popular misconceptions around quantum physics.  Orzel does a good job comparing and contrasting the science with the misconceptions perpetrated by these quacks, and by the media.</p>
<p>I would highly recommend this book for anyone looking to learn more about Quantum Physics.</p>
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